Network Methods for Describing Sample Relationships in Genomic Datasets: Application to Huntington’s Disease

Michael C Oldham¹, Peter Langfelder², Steve Horvath^2,3

¹Department of Neurology, The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, USA
²Department of Human Genetics, University of California, Los Angeles, USA
³Department of Biostatistics, University of California, Los Angeles, CA, USA

oldhamm@stemcell.ucsf.edu, shorvath@mednet.ucla.edu

R functions SampleNetworks and ModuleSampleNetworks

Sample Networks are implemented as a function within the freely available R language and environment. Please download and save the relevant R functions:

• R function SampleNetwork, version 1.065
• R function ModuleSampleNetwork, version 0.5

We recommend creating a separate directory (folder) to hold these files.

Tutorial and example data

The tutorial illustrates the use of SampleNetworks on an example data set.

• Tutorial in Word format
• Tutorial in PDF format
• Zipped data sets for SampleNetworks
• Zipped data sets for ModuleSampleNetworks

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